Publications

 


2014

  • Shiono K, Ando M, Nishiuchi S, Takahashi H, Watanabe K, Nakamura M, Matsuo Y, Yasuno N, Yamanouchi U, Fujimoto M, Takanashi H, Ranathunge K, Franke R, Shitan N, Nishizawa N.K, Takamure I, Yano M, Tsutsumi N, Schreiber L, Yazaki K, Nakazono M, Kato K (2014) RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa) The Plant Journal (Published Online) 10.1111/tpj.12614
  • Arai-Sanoh Y, Takai T, Yoshinaga S, Nakano H, Kojima M, Sakakibara H, Kondo M, Uga Y (2014) Deep rooting conferred by DEEPER ROOTING 1 enhances rice yield in paddy fields Scientific Reports 4:5563 10.1038/srep05563
  • Yamamoto E, Iwata H, Tanabata T, Mizobuchi R, Yonemaru J, Yamamoto T,Yano M (2014) Effect of advanced intercrossing on genome structure and on the power to detect linked quantitative trait loci in a multi-parent population: a simulation study in rice BMC Genetics 15:50 10.1186/1471-2156-15-50
  • Matsubara K,Hori K,Ogiso-Tanaka E, Yano M (2014) Conservation and diversification of QTGs involved in photoperiodic flowering between rice and Arabidopsis Frontiers in Plant Science. 10.3389/fpls.2014.00193
  • Yonemaru J, Mizobuchi R, Kato H, Yamamoto T, Yamamoto E, Matasubara K, Hirabayashi H, Takeuchi Y, Tsunematsu H, Ishii T, Ohta H, Maeda H, Ebana K, Yano M (2014) Genomic regions involved in yield potential detected by genome-wide association analysis in Japanese high-yielding rice cultivars BMC Genomics 15:346 10.1186/1471-2164-15-346
  • Xu X, Hayashi N, Wang C-T, Fukuoka S, Kawasaki S, Takatsuji H, Jiang C-J (2014) Rice blast resistance gene Pikahei-1(t), a member of a resistance gene cluster on chromosome 4, encodes a nucleotide-binding site and leucine-rich repeat protein Molecular Breeding (Online First) doi:10.1007/s11032-014-0067-6
  • Fukuoka S, Yamamoto S, Mizobuchi R, Yamanouchi U, Ono K, Kitazawa N, Yasuda N, Fujita Y, Nguyen T.T.T, Koizumi S, Sugimoto K, Matsumoto T, Yano M (2014) Multiple functional polymorphisms in a single disease resistance gene in rice enhance durable resistance to blast Scientific Reports 4:4550 10.1038/srep04550
  • Tanaka Y, Kumagai E, Tazoe Y, Adachi S, Homma K (2014) Leaf photosynthesis and its genetic improvement from the perspective of energy flow and CO2 diffusion Plant Production Science 17(2):111-123 10.1626/pps.17.111
  • Adachi S, Baptista LZ, Sueyoshi T, Murata K, Yamamoto T, Ebitani T, Ookawa T, Hirasawa T (2014) Introgression of two chromosome regions for leaf photosynthesis from an indica rice into the genetic background of a japonica rice. J. Exp Bot 10.1093/jxb/eru047
  • Shinada H, Yamamoto T, Yamamoto E, Hori K, Yonemaru J, Matsuba S, Fujino K (2014) Historical changes in population structure during rice breeding programs in the northern limits of rice cultivation. Theor Appl Genet (Online First) 10.1007/s00122-014-2274-2
  • Sakai H, Kanamori H, Arai-Kichise Y, Shibata-Hatta M, Ebana K, Oono Y, Kurita K, Fujisawa H, Katagiri S, Mukai Y, Hamada M, Itoh T, Matsumoto T, Katayose Y, Wakasa K, Yano M, Wu J (2014) Construction of pseudomolecule sequences of the aus rice cultivar Kasalath for comparative genomics of Asian cultivated rice. DNA Research (Advance Access) 10.1093/dnares/dsu006
  • Arai-Kichise Y, Shiwa Y, Ebana K, Shibata-Hatta M, Yoshikawa H, Yano M, Wakasa K (2014) Genome-wide DNA polymorphisms in seven rice cultivars of Temperate and Tropical Japonica groups. PLoS ONE 9(1):e86312 10.1371/journal.pone.0086312

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2013

  • Yonemaru J, Ebana K, Yano M (2013) HapRice, a SNP haplotype database and a web tool for rice. Plant Cell Physiol (Advance Access) 10.1093/pcp/pct188
  • Hanzawa E, Sasaki K, Nagai S, Obara M, Fukuta Y, Uga Y, Miyao A, Hirochika H, Higashitani A, Maekawa M, Sato T (2013) Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.) Rice 6:30 10.1186/1939-8433-6-30
  • Takai T, Ohsumi A, Arai Y, Iwasawa N, Yano M, Yamamoto T, Yoshinaga S, Kondo M (2013) QTL analysis of leaf photosynthesis in rice. Japan Agricultural Research Quarterly 47(3):227-235
  • Kunihiro S, Saito T, Matsuda T, Inoue M, Kuramata M, Taguchi-Shiobara F, Youssefian S, Berberich T, Kusano T (2013) Rice DEP1, encoding a highly cysteine-rich G protein γ subunit, confers cadmium tolerance on yeast cells and plants. J. Exp. Bot 64:4517-4527.
  • Taguchi-Shiobara F, Ozaki H, Sato H, Maeda H, Kojima Y, Ebitani T, Yano M (2013) Mapping and validation of QTLs for rice sheath blight resistance. Breeding Science 63:301-308.
  • Uga Y, Yamamoto E, Kanno N, Kawai S, Mizubayashi T, Fukuoka S (2013) A major QTL controlling deep rooting on rice chromosome 4. Scientific Reports 3:3040 10.1038/srep03040
  • Ogiso-Tanaka E, Matsubara K,Wu J,Yamamoto S, Nonoue Y, Yamane H, Ishikubo H, Tanaka T, Ebana K, Matsumoto T, Yano M (2013) Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice. PLoS ONE 8: e75959
  • Kobayashi A,Sonoda J, Sugimoto K, Kondo M, Iwasawa N, Hayashi T,Tomita K, Yano M, Shimizu T(2013) Detection and verification of QTLs associated with heat-induced quality decline of rice (Oryza sativa L.) using recombinant inbred lines and near isogenic lines cultivated in multiple environments. Breeding Science 63: 339-346.
  • Abe T, Nonoue Y, Ono N, Omoteno M, Kuramata M, Fukuoka S, Yamamoto T, Yano M, Ishikawa S (2013) Detection of QTLs for reducing cadmium (Cd) concentrations in rice grain by using LAC23/Koshihikari chromosome segment substitution lines. Breeding Science 63:284-291.
  • Hori K, Yano M (2013) Genetic improvement of grain quality in Japonica rice. In Translational Genomics for Crop Breeding, Volume II: Abiotic Stress, Yield and Quality. p143-160, Edited by Rajeev K. Varshney and Roberto Tuberosa, John Wiley & Sons, Inc.
  • Bentley AR, Jensen EF, Mackay IJ, Ho¨nicka H, Fladung M, Hori K, Yano M, Mullet JE, Armstead IP, Hayes C, Thorogood D, Lovatt A, Morris R, Pullen N, Mutasa-Go¨ttgens E, Cockram J (2013) Flowering time. Genomics and Breeding for Climate-Resilient Crops, Vol. 2, p1-66, C. Kole (ed.),DOI 10.1007/978-3-642-37048-9_1, Springer-Verlag Berlin Heidelberg 2013
  • Takai T, Adachi S, Taguchi-Shiobara F, Sanoh-Arai Y, Iwasawa N, Yoshinaga S, Hirose S, Taniguchi Y, Yamanouchi U, Wu J, Matsumoto T, Sugimoto K, Kondo K, Ikka T, Ando T, Kono K, Ito S, Shomura A, Ookawa T, Hirasawa T, Yano M, Kondo M, Yamamoto T (2013) A natural variant of NAL1, selected in high-yield rice breeding programs, pleiotropically increases photosynthesis rate. Scientific Reports 3:2149 10.1038/srep02149
  • Uga Y, Sugimoto K, Ogawa S, Rane J, Ishitani M, Hara N, Kitomi Y, Inukai Y, Ono K, Kanno N, Inoue H, Takehisa H, Motoyama R, Nagamura Y, Wu J, Matsumoto T, Takai T, Okuno K, Yano M (2013) Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions. Nature Genetics (Advance online publication) 10.1038/ng.2725
  • Hori K, Ogiso-Tanaka E, Matsubara K, Yamanouchi U, Ebana K, Yano M (2013) Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response. The Plant Journal (Published Online):Early View 10.1111/tpj.12268
  • Mizobuchi R, Sato H, Fukuoka S, Tsushima S, Imbe T, Yano M (2013) Identification of qRBS1, a QTL involved in resistance to bacterial seedling rot in rice Theor Appl Genet (Online First) 10.1007/s00122-013-2145-2
  • Toda Y, Tanaka M, Ogawa D, Kurata K, Kurotani K, Habu Y, Ando T, Sugimoto K, Mitsuda N, Katoh E, Abe K, Miyao A, Hirochika H, Hattori T, Takeda S (2013) RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation. The Plant Cell (Published online):before print doi;10.1105/tpc.113.112052
  • Mizobuchi R, Sato H, Fukuoka S, Tanabata T, Tsushima S, Imbe T, Yano M (2013) Mapping a quantitative trait locus for resistance to bacterial grain rot in rice. Rice 6:13 doi;10.1186/1939-8433-6-13
  • Kawahigashi H, Oshima M, Nishikawa T, Okuizumi H, Kasuga S, Yonemaru J (2013) A novel waxy allele in sorghum landraces in East Asia Plant Breeding (Published Online):Early View 10.1111/pbr.12054
  • Riemann M, Haga K, Shimizu T, Okada K, Ando S, Mochizuki S, Nishizawa Y, Yamanouchi U, Nick P, Yano M, Minami E, Takano M, Yamane H, Iino M (2013) Identification of rice ALLENE OXIDE CYCLASE mutants and the function of jasmonate for defence against Magnaporthe oryzae Plant J. (Published Online): doi:10.1111/tpj.12115
  • Adachi S, Nakae T, Uchida M, Soda K, Takai T, Oi T, Yamamoto T, Ookawa T, Miyake H, Yano M, Hirasawa T (2013) The mesophyll anatomy enhancing CO2 diffusion is a key trait for improving rice photosynthesis J. Exp. Bot. (Advance Access) doi:10.1093/jxb/ers382

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2012

  • Hori K, Kataoka T, Miura K, Yamaguchi M, Saka N, Nakahara T, Sunohara Y, Ebana K, Yano M (2012) Variation in heading date conceals quantitative trait loci for other traits of importance in breeding selection of rice Breeding Science 62(3):223-234 10.1270/jsbbs.62.223
  • Yamamoto E, Yonemaru J, Yamamoto T, Yano M (2012) Rice OGRO: The Overview of functionally characterized Genes in Rice online database Rice 5:26 doi;10.1186/1939-8433-5-26
  • Fujino K, Yamanouchi U, Yano M (2012) Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation Theor Appl Genet (Online First) doi;10.1007/s00122-012-2005-5
  • Tanabata T, Shibaya T, Hori K, Ebana K, Yano M (2012) SmartGrain: High-throughput phenotyping software for measuring seed shape using image analysis. Plant Physiol doi;10.1104/pp.112.205120 [supplementary materials] field1Web site for SmartGrain
  • Yonemaru J, Morita S (2012) Image analysis of grain shape to evaluate the effects of high temperatures on grain filling of rice, Oryza sativa L. Field Crops Research (In Press):Corrected Proof doi;10.1016/j.fcr.2012.08.003
  • Takai T, Yonemaru J, Kaidai H, Kasuga S (2012) Quantitative trait locus analysis for days-to-heading and morphological traits in an RIL population derived from an extremely late flowering F1 hybrid of sorghum Euphytica (Online First) doi;10.1007/s10681-012-0727-8
  • Segami S, Kono I, Ando T, Yano M, Kitano H, Miura K, Iwasaki Y (2012) Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice Rice 5:4 doi:10.1186/1939-8433-5-4
  • Ishimaru Y, Takahashi R, Bashir K, Shimo H, Senoura T, Sugimoto K, Ono K, Yano M, Ishikawa S, Arao T, Nakanishi H, Nishizawa N.K (2012) Characterizing the role of rice NRAMP5 in manganese, iron and cadmium transport Scientific Reports 2:286 doi:10.1038/srep00286
  • Fukuoka S, Mizobuchi R, Saka N, Ivan S, Matsumoto T, Okuno K, Yano M (2012) A multiple gene complex on rice chromosome 4 is involved in durable resistance to rice blast Theor Appl Genet;(Online First) doi;10.1007/s00122-012-1852-4
  • Saito H, Ogiso-Tanaka E, Okumoto Y, Yoshitake Y, Izumi H, Yokoo T, Matsubara K, Hori K, Yano M, Inoue H, Tanisaka T (2012) Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions Plant Cell Physiol 53(4):717-728 doi;10.1093/pcp/pcs029
  • Yonemaru J-i, Yamamoto T, Ebana K, Yamamoto E, Nagasaki H, Shibaya T, Yano M (2012) Genome-wide haplotype changes produced by artificial selection during modern rice breeding in Japan PLoS ONE 7(3):e32982 doi;10.1371/journal.pone.0032982
  • Matsubara K, Ogiso-Tanaka E, Hori K, Ebana K, Ando T, Yano M (2012) Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering Plant and Cell Physiology 53(4):709-716 doi;10.1093/pcp/pcs028
  • Matsuda F, Okazaki Y, Oikawa A, Kusano M, Nakabayashi R, Kikuchi J, Yonemaru J, Ebana K, Yano M, Saito K (2012) Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis The Plant Journal 70(4):624-636 doi;10.1111/j.1365-313X.2012.04903.x

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2011

  • Yoshida A, Ohmori Y, Kitano H, Taguchi-Shiobara F, Hirano H (2011) ABERRANT SPIKELET AND PANICLE1 encoding a TOPLESS-related transcriptional corepressor is involved in regulation of meristem fate in rice. The Plant Journal 70(2):327-339 doi;10.1111/j.1365-313X.2011.04872.x
  • Marzougui S, Sugimoto K, Yamanouchi U, Shimono M, Hoshino T, Hori K, Kobayashi M, Ishiyama K, Yano M (2011) Mapping and characterization of seed dormancy QTLs using chromosome segment substitution lines in rice. Theor. Appl. Genet. 124(5):893-902 doi;10.1007/s00122-011-1753-y
  • Matsubara K, Ebana K, Mizubayashi T, Itoh S, Ando T, Nonoue Y, Ono N,Shibaya T, Ogiso E, Hori K, Fukuoka S, Yano M (2011) Relationship between transmission ratio distortion and genetic divergence in intraspecific rice crosses. Mol. Genet. Genom. 286(5,6):307-319 doi:10.1007/s00438-011-0648-6
  • Kato T, Segami S, Toriyama M, Kono I, Ando T, Yano M, Kitano H, Miura K, Iwasaki Y (2011) Detection of QTLs for grain length from large grain rice (Oryza sativa L.) Breed. Sci. 61(3):269-274 doi:10.1270/jsbbs.61.269
  • Ebitani T, Hayashi N, Omoteno M, Ozaki H, Yano M, Morikawa M, Fukuta Y (2011) Characterization of Pi13, a blast resistance gene that maps to chromosome 6 in indica rice (Oryza sativa L. variety, Kasalath) Breed. Sci. 61(3):251-259 doi;10.1270/jsbbs.61.251
  • Uga Y, Hanzawa E, Nagai S, Sasaki K, Yano M, Sato T (2012) Identification of qSOR1, a major rice QTL involved in soil-surface rooting in paddy fields. Theor Appl Genet 124(1):75-86 doi;10.1007/s00122-011-1688-3
  • Kasajima I, Ebana K, Yamamoto T, Takahara K, Yano M, Kawai-Yamada M, Uchimiya H (2011) Molecular distinction in genetic regulation of nonphotochemical quenching in rice. Proc Natl Acad Sci U S A 108(33):13835-13840 doi;10.1073/pnas.1104809108
  • Shibaya T, Nonoue Y, Ono N, Yamanouchi U, Hori K, Yano M (2011) Genetic interactions involved in the inhibition of heading by heading date QTL, Hd2 in rice under long-day conditions Theor Appl Genet 123(7):1133-1143 doi;10.1007/s00122-011-1654-0
  • Tamura K, Kiyoshi T, Yonemaru J (2012) The development of highly transferable intron-spanning markers for temperate forage grasses. Mol Breed 1:1-8 doi;10.1007/s11032-011-9593-7
  • Saisho D, Ishii M, Hori K, Sato K  (2011) Natural variation of barley vernalization requirements: Implication of quantitative variation of winter growth habit as an adaptive trait in East Asia Plant Cell Physiol 52(5):775-784 doi;10.1093/pcp/pcr046
  • Adachi S, Nito N, Kondo M, Yamamoto T, Arai-Sanoh Y, Ando T, Ookawa T, Yano M, Hirasawa T (2011) Identification of chromosomal regions controlling the leaf photosynthetic rate in rice by using a progeny from Japonica and high-yielding Indica varieties. Plant Prod Sci 14(2):118-127 doi;10.1626/pps.14.118
  • Kawahigashi H, Kasuga S, Ando T, Kanamori H, Wu J, Yonemaru J, Sazuka T, Matsumoto T (2011) Positional cloning of ds1, the target leaf spot resistance gene against Bipolaris sorghicola in sorghum. Theor Appl Genet 123(1):131-142 doi;10.1007/s00122-011-1572-1
  • Matsumoto T, Tanaka T, Sakai H, Amano N, Kanamori H, Kurita K, Kikuta A, Kamiya K, Yamamoto M, Ikawa H, Fujii N, Hori K, Itoh T, Sato K (2011) Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from twelve clone libraries Plant Physiology 156(1):20-28 doi:10.1104/pp.110.171579
  • Taguchi-Shiobara F, Kojima Y, Ebitani T, Yano M, Ebana K (2011) Variation in domesticated rice inflorescence architecture revealed by principal component analysis and quantitative trait locus analysis. Breed. Sci. 61(1):52-60 doi:10.1270/jsbbs.61.52
  • Abe T, Taguchi-Shiobara F, Kojima Y, Ebitani T, Kuramata M, Yamamoto T, Yano M, Ishikawa S (2011) Detection of a QTL for accumulating Cd in rice that enables efficient Cd phytoextraction from soil. Breed. Sci. 61(1):43-51 doi:10.1270/jsbbs.61.43
  • Taguchi-Shiobara F, Kawagoe Y, Kato H, Onodera H, Tagiri A, Hara N, Miyao A, Hirochika H, Kitano H, Yano M, Toki S (2011) A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets. Breed. Sci. 61(1):17-25 doi:10.1270/jsbbs.61.17
  • Matsubara K, Yamanouchi U, Nonoue Y, Sugimoto K, Wang ZX, Minobe Y, Yano M (2011) Ehd3, encoding a PHD finger-containing protein, is a critical promoter of rice flowering. Plant J 66:603-612 doi: 10.1111/j.1365-313X.2011.04517.x
  • Abe Y, Mieda K, Ando T, Kono I, Yano M, Kitano H, Iwasaki Y (2010) The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice Gene. Genet. Syst. 85(5):327-339 doi:10.1266/ggs.85.327
  • Adachi S, Tsuru Y, Nito N, Murata K, Yamamoto T, Ebitani T, Ookawa T, Hirasawa T (2011) Identification and characterization of genomic regions on chromosomes 4 and 8 that control the rate of photosynthesis in rice leaves J. Exp. Bot. 62(6):1927-1938 doi: 10.1093/jxb/erq387
  • Arai-Kichise Y, Shiwa Y, Nagasaki H, Ebana K, Yoshikawa H, Yano M, Wakasa K (2011) Discovery of genome-wide DNA polymorphisms in a landrace cultivar of japonica rice by whole-genome sequencing Plant Cell Physiol. 52(2):274-282 doi:10.1093/pcp/pcr003
  • Sato Y, Antonio B, Namiki N, Motoyama R, Sugimoto K, Takehisa H, Minami H, Kamatsuki K, Kusaba M, Hirochika H, Nagamura Y. (2011) Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice. BMC Plant Biol. 2011 12;11(1):10 doi:10.1186/1471-2229-11-10
  • Ebana K, Shibaya T, Wu J, Matsubara K, Kanamori H, Yamane H, Yamanouchi U, Mizubayashi T, Kono I, Shomura A, Ito S, Ando T, Hori K, Matsumoto T, Yano M (2011) Uncovering of major genetic factors generating naturally occurring variation in heading date among Asian rice cultivars. Theor Appl Genet. 122:1199-1210 doi:10.1007/s00122-010-1524-1
  • Nagamura Y, Antonio B.A, Sato Y, Miyao A, Namiki N, Yonemaru J, Minami H, Kamatsuki K, Shimura K, Shimizu Y, Hirochika H (2011) Rice TOGO Browser: a platform to retrieve integrated information for rice functional and applied genomics. Plant Cell Physiol. 52(2):230-237 doi:10.1093/pcp/pcq197
  • Uga Y, Okuno K ,Yano M (2011) Dro1, a major QTL involved in deep rooting of rice under upland field conditions. J. Exp. Bot. published online: January 6, 2011 doi:10.1093/jxb/erq429

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2010

  • Hirabayashi H, Sato H, Nonoue Y, Kuno-Takemoto Y, Takeuchi Y,Kato H, Nemoto H, Ogawa T, Yano M, Imbe T, Ando I (2010) Development of introgression lines derived from Oryza rufipogon and O. glumaepatula in the genetic background of japonica cultivated rice (O. sativa L.) and evaluation of resistance to rice blast. Breed. Sci. 60:604-612 doi:10.1270/jsbbs.60.604
  • Nagasaki H, Ebana K, Shibaya T, Yonemaru J, Yano M (2010) Core single-nucleotide polymorphisms - a tool for genetic analysis of the Japanese rice population. Breed. Sci. Vol. 60: 648-655 doi:10.1270/jsbbs.60.648
  • McCouch SR, Zhao K, Wright M, Tung C-W, Ebana K, Thomson M, Reynolds A, Wang D, DeClerck G, Ali M-L, McClung A, Eizenga G, Bustamante C (2010) Development of genome-wide SNP assays for rice Breed. Sci. Vol. 60: 524-535 doi:10.1270/jsbbs.60.524
  • Fukuoka S, Nonoue Y, Yano M (2010) Germplasm enhancement by developing advanced plant materials from diverse rice accessions. Breed. Sci. 60:509-517 doi:10.1270/jsbbs.60.509
  • Ebana K, Yonemaru J, Fukuoka S, Iwata H, Kanamori H, Namiki N, Nagasaki H, Yano M (2010) Genetic structure revealed by a whole-genome single-nucleotide polymorphism survey of diverse accessions of cultivated Asian rice (Oryza sativa L.). Breed. Sci. 60(4):390-397 doi:10.1270/jsbbs.60.390
  • Shinozaki Y, Tanabata T, Ogiwara I, Yamada T, Kanekatsu M (2010) Application of digital image analysis system for fine evaluation of varietal differences and the role of ethylene in visible petal senescence of morning glory. J. Plant Growth Regulation 30(2):229-234 doi:10.1007/s00344-010-9182-8
  • Tamura K, Yonemaru J (2010) Next-generation sequencing for comparative transcriptomics of perennial ryegrass (Lolium perenne L.) and meadow fescue (Festuca pratensis Huds.) during cold acclimation. Grassland Science 56(4):230-239 doi:10.1111/j.1744-697X.2010.00199.x
  • Ookawa T, Hobo T, Yano M, Murata K, Ando T, Miura H, Asano K, Ochiai Y, Ikeda M, Nishitani R, Ebitani T, Ozaki H, Angeles ER, Hirasawa T, Matsuoka M (2010) New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield. Nature Commun. 1:132 doi: 10.1038/ncomms1132
  • Covey PA, Kondo K, Welch L, Frank E, Sianta S, Kumar A, Nunez R, Lopez-Casado G, Van Der Knaap E, Rose JK, McClure BA, Bedinger PA (2010) Multiple features that distinguish unilateral incongruity and self-incompatibility in the tomato clade. Plant J. 64:367-378 doi: 10.1111/j.1365-313X.2010.04340.x. [Epub ahead of print]
  • Ohsumi A, Takai T, Ida M, Yamamoto T, Arai-Sanoh Y, Yano M, Ando T, Kondo M (2010) Evaluation of yield performance in rice near-isogenic lines with increased spikelet number. Field Crops Research 120:68-75 doi:10.1016/j.fcr.2010.08.013
  • She KC, Kusano H, Koizumi K, Yamakawa H, Hakata M, Imamura T, Fukuda M, Naito N, Tsurumaki Y, Yaeshima M, Tsuge T, Matsumoto K, Kudoh M, Itoh E, Kikuchi S, Kishimoto N, Yazaki J, Ando T, Yano M, Aoyama T, Sasaki T, Satoh H, Shimada H. (2010) A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality. Plant Cell 22:3280-3294 doi:10.1105/tpc.109.070821
  • Ueno D, Yamaji N, Kono I, Huang CF, Ando T, Yano M, Ma JF (2010) Gene limiting cadmium accumulation in rice. Proc Natl Acad Sci USA. 107:16500-16505 doi:10.1073/pnas.1005396107
  • Hayashi N, Inoue H, Kato T, Funao T, Shirota M, Shimizu T, Kanamori H, Yamane H, Hayano-Saito Y, Matsumoto T, Yano M, Takatsuji H (2010) Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication. Plant J. 64:498-510 doi:10.1111/j.1365-313X.2010.04348.x
  • Adachi S, Tsuru Y, Kondo M, Yamamoto T, Arai-Sanoh Y, Ando T, Ookawa T, Yano M, Hirasawa T (2010) Characterization of a rice variety with high hydraulic conductance and identification of the chromosome region responsible using chromosome segment substitution lines. Ann Bot. 106:803-811 doi:10.1093/aob/mcq175
  • Tanabata T, Taguchi-Shiobara F, Kishimoto N, Chechetka S, Shinomura T, Habu Y (2010) A phenomics approach detected differential epigenetic growth regulation between inbreds and their hybrid in Oryza sativa. Molecular Breeding 26:729-734 doi:10.1007/s11032-010-9484-3
  • Takai T, Kondo M, Yano M, Yamamoto T (2010) A quantitative trait locus for chlorophyll content and its association with leaf photosynthesis in rice. Rice 172-180 doi:10.1007/s12284-010-9047-6
  • Fukuoka S, Ebana K, Yamamoto T, Yano M (2010) Integration of Genomics into Rice Breeding. Rice 3:131-137 doi:10.1007/s12284-010-9044-9
  • Fujita D, Santos RE, Ebron LA, Telebanco-Yanoria MJ, Kato H, Kobayashi S, Uga Y, Araki E, Takai T, Tsunematsu H, Imbe T, Khush GS, Brar DS, Fukuta Y, Kobayashi N (2010) Characterization of introgression lines for yield-related traits with Indica-type rice variety IR64 genetic background. JARQ 44: 277-290. http://www.jircas.affrc.go.jp/kankoubutsu/jarq/Vol_html/44-3.html
  • Kitagawa K, Kurinami S, Oki K, Abe Y, Ando T, Kono I, Yano M, Kitano H,Iwasaki Y (2010) A novel kinesin 13 protein regulating rice seed length. Plant Cell Physiol. 51: 1315-1329 doi:10.1093/pcp/pcq092
  • Yano M, Ebana K, Yamamoto T (2010) Genomics - assisted breeding in rice. Gamma Field Symposia 47: 1-9.
  • Yamagishi M, Takeuchi Y, Tanaka I, Kono I, Murai K, Yano M (2010) Segregation distortion in F2 and doubled haploid populations of temperate japonica rice. Journal of Genetics 89: 237-241 URL:http://www.ias.ac.in/jgenet/Forthcoming.htm
  • Itoh H, Nonoue Y, Yano M, Izawa T (2010) A pair of floral regulators sets critical day length for Hd3a florigen expression in rice. Nature Genetics 42:635-639 doi:10.1038/ng.606
  • Uga Y, Okuno K, Yano M (2010) Fine mapping of Sta1, a quantitative trait locus determining stele transversal area, on rice chromosome 9. Mol. Breed. 26:533-538 doi:10.1007/s11032-010-9450-0
  • Yonemaru J, Yamamoto T, Fukuoka S, Uga Y, Hori K, Yano M (2010) Q-TARO: QTL Annotation Rice Online Database. Rice. 3:194-203 doi:10.1007/s12284-010-9041-z
  • Yamamoto T,Nagasaki H, Yonemaru J, Ebana K, Nakajima M, Shibaya T, Yano M (2010) Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genomics 11:267 doi:10.1186/1471-2164-11-267
  • Tanabata T, Sawase K, Barnabas B, Nobuhara H (2010) Interactive Data Mining for Large-Scale Image Databases Based on Formal Concept Analysis. JACIII 14(3):303-308
  • Obara M,Tamura W, Ebitani T, Yano M, Sato T, Yamaya T (2010) Fine-mapping of qRL6.1, a major QTL for root length of rice seedlings grown under a wide range of NH4+ concentrations in hydroponic conditions. Theor. Appl. Genet. 121:535-547 doi:10.1007/s00122-010-1328-3
  • Whipple CJ, Hall DH, DeBlasio S, Taguchi-Shiobara F, Schmidt RJ, Jackson DP (2010) A conserved mechanism of bract suppression in the grass family. Plant Cell 22: 565-578 doi:10.1105/tpc.109.073536
  • Uga Y, Siangliw M, Nagamine T, Ohsawa R, Fujimura T, Fukuta Y (2010) Comparative mapping of QTLs determining glume, pistil and stamen sizes in cultivated rice (Oryza sativa L.). Plant Breeding 129(6):657-669 doi:10.1111/j.1439-0523.2009.01765.x
  • Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, Ishiyama K, Kobayashi M, Ban Y, Hattori T, Yano M (2010) Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. Proc Natl Acad Sci USA. 107:5792-5797 doi:10.1073/pnas.0911965107
  • Ishikawa S, Abe T, Kuramata M, Yamaguchi M. , Ando T, Yamamoto T, Yano M (2010) A major quantitative trait locus for increasing cadmium-specific concentration in rice grain is located on the short arm of chromosome 7. J. Exp. Bot. 61(3): 923-934 doi:10.1093/jxb/erp360
  • Hori K,Sugimoto K,Nonoue Y, Ono N,Matsubara K,Yamanouchi U,Abe A,Takeuchi Y, Yano M (2010) Detection of quantitative trait loci controlling pre-harvest sprouting resistance by using backcrossed populations of japonica rice cultivars. Theor. Appl. Genet. 120(8):1547-1557 doi:10.1007/s00122-010-1275-z
  • Ogiso E, Takahashi Y, Sasaki T, Yano M, Izawa T (2010) The role of CK2 in flowering time regulation has diversified during evolution. Plant Physiol. 152:808-820 doi:10.1104/pp.109.148908
  • Takai T, Yano M, Yamamoto T (2010) Canopy temperature on clear and cloudy days can be used to estimate varietal differences in stomatal conductance in rice. Field Crops Research 115:165-170 doi:10.1016/j.fcr.2009.10.019

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2009

  • Mochida K, Furuta T, Ebana K, Shinozaki K, Kikuchi J (2009) Correlation exploration of metabolic and genomic diversities in rice. BMC Genomics 10:568:doi:10.1186/1471-2164-10-568
  • Ogiso E, Takahashi Y, Sasaki T, Yano M, Izawa T (2009) The role of CK2 in flowering time regulation has diversified during evolution. Plant Physiol. (First published on December 9):doi:10.1104/pp.109.148908
  • Hori K, Yamamoto T, Ebana K,Takeuchi Y,Yano M (2009) A novel quantitative trait locus, qCL1, involved in semi-dwarfism derived from Japanese rice cultivar Nipponbare. Breed. Sci. 59(3):285-295 doi:10.1270/jsbbs.59.285
  • Fukuoka S, Saka N,Koga H,Ono K,Shimizu T,Ebana K,Hayashi N,Takahashi A,Hirochika H,Okuno K,Yano M (2009) Loss of function of a proline-containing protein confers durable disease resistance in rice. Science,325(5943):998-1001 Direct link
  • Iwata H, Ebana K, Uga Y, Hayashi T, Jannink J-L (2009) Genome-wide association study of grain shape variation among Oryza sativa L. germplasms based on elliptic Fourier analysis. Mol. Breed. 25(2):203-215 doi:10.1007/s11032-009-9319-2
  • Iwata H, Ebana K,Fukuoka S, Jannink JL, Hayashi T (2009) Bayesian multilocus association mapping on ordinal and censored traits and its application to the analysis of genetic variation among Oryza sativa L. germplasms. Theor. Appl. Genet. 118(5):865-880 doi:10.1007/s00122-008-0945-6
  • Komori T, Miyata M, Yamamoto T, Nitta N, Hiei Y, Yano M, Ueki J, Komari T (2009) Isolation and functional analysis of the gene controlling the stub-spreading trait in rice (Oryza sativa L.) Plant Breed. 128(6):568-575 doi:10.1111/j.1439-0523.2009.01639.x
  • Heuer S, Lu X, Chin J.H, Tanaka J.P, Kanamori H, Matsumoto T, Leon T.D,Ulat V.J, Ismail A.M, Yano M, Wissuwa M (2009) Comparative sequence analyses of the major quantitative trait locus phosphorus uptake 1 (Pup1) reveal a complex genetic structure Plant Biotechnol. J. 7:456-471 doi:10.1111/j.1467-7652.2009.00415.x
  • Yonemaru J, Ando T, Mizubayashi T, Kasuga S, Matsumoto T, Yano M (2009) Development of Genome-wide Simple Sequence Repeat Markers Using Whole-genome Shotgun Sequences of Sorghum (Sorghum bicolor (L.) Moench) DNA Research 16:187-193 doi:10.1093/dnares/dsp005
  • Yamamoto T, Yonemaru J, Yano M (2009) Towards the understanding of complex traits in rice: Substantially or superficially? DNA Research 16:141-154 doi:10.1093/dnares/dsp006
  • Tamura KI, Yonemaru JI, Hisano H, Kanamori H, King J, King IP, Tase K, Sanada Y, Komatsu T, Yamada T.(2009) Development of intron-flanking EST markers for the Lolium/Festuca complex using rice genomic information.Theor. Appl. Genet. 118(8):1549-60 doi:10.1007/s00122-009-1003-8
  • Huang C.F, Yamaji N, Mitani N, Yano M, Nagamura Y, Ma J.F (2009) A bacterial-type ABC transporter is involved in aluminum tolerance in rice. Plant Cell 21(2):655-667 doi:10.1105/tpc.108.064543
  • Takai T, Ohsumi A, San-oh Y, Laza M.R.C, Kondo M, Yamamoto T, Yano M (2009) Detection of a quantitative trait locus controlling carbon isotope discrimination and its contribution to stomatal conductance in japonica rice. Theor. Appl. Genet.118(7):1401-10 doi:10.1007/s00122-009-0990-9
  • Ueno D, Kono I, Yokosho K, Ando T, Yano M, Ma J.F (2009) A major quantitative trait locus controlling cadmium translocation in rice (Oryza sativa). New Phytol. 182: 644-653 doi: 10.1111/j.1469-8137.2009.02784.x
  • Yasuno N, Takamure I, Kidou S, Tokuji Y, Ureshi A, Funabiki A, Ashikaga K, Yamanouchi U, Yano M, Kato K (2009) Rice shoot branching requires an ATP-binding cassette subfamily G protein. New Phytol. 182(1):91-101 PMID: 19140940
  • Uga Y, Ebana K, Abe J, Morita S, Okuno K, Yano M (2009) Variation in root morphology and anatomy among accessions of cultivated rice (Oryza sativa L.) with different genetic backgrounds. Breed. Sci. 59(1):87-93 doi: 10.1270/jsbbs.59.87
  • Izawa T, Konishi S, Shomura A, Yano M (2009) DNA changes tell us about rice domestication. Curr. Opin. Plant Biol. 12(2):185-192 PMID: 19185529
  • Yano M, Tuberosa R (2009) Genome studies and molecular genetics-from sequence to crops: genomics comes of age. Curr. Opin. Plant Biol. 12(2):103-106 PMID: 19211299

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2008

  • Konishi S, Ebana K, Izawa T (2008) Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars. Plant Cell Physiol. 49(9):1283-1293. doi:10.1093/pcp/pcn118
  • Tsukazaki H, Yamashita K, Yaguchi S, Masuzaki S, Fukuoka H, Yonemaru J, Kanamori H, Kono I, Hang TT, Shigyo M, Kojima A, Wako T. (2008) Construction of SSR-based chromosome map in bunching onion (Allium fistulosum). Theor. Appl. Genet. 117(8):1213-1223 PMID: 18818898
  • Izawa T, Shomura A, Konishi S, Ebana K, Yano M (2008) Reply to “Japonica rice carried to, not from, Southeast Asia ENature Genetics 40:1264-1266. doi:10.1038/ng1108-1265
  • Ashikawa I, Hayashi N, Yamane H, Kanamori H, Wu J, Matsumoto T, Ono K, Yano M (2008) Two adjacent NBS-LRR class genes are required to confer Pikm-specific rice blast resistance. Genetics;published ahead of print on October 20, 2008 10.1534/genetics.108.095034
  • Takeuchi Y, Hori K, Suzuki K, Nonoue Y, Takemoto-Kuno Y, Maeda H, Sato H, Hirabayashi H, Ohta H, Ishii T, Kato H, Nemoto H, Imbe T, Ohtsubo K, Yano M, Ando I (2008) Major QTLs for eating quality of an elite Japanese rice cultivar, Koshihikari, on the short arm of chromosome 3. Breed. Sci. 58:437-445 doi:10.1270/jsbbs.58.437
  • Kawakatsu T, Yamamoto M.P, Hirose S, Yano M, Takaiwa F (2008) Characterization of a new rice glutelin gene GluD-1 expressed in the starchy endosperm. Journal of Experimental Botany 59:4233-4245 10.1093/jxb/ern265
  • Matsubara K, Kono I, Hori K, Nonoue Y, Ono N, Shomura A, Mizubayashi T,Yamamoto S, Yamanouchi U, Shirasawa K, Nishio T, Yano M (2008) Novel QTLs for photoperiodic flowering revealed by using reciprocal backcross inbred lines from crosses between japonica rice cultivars. Theor. Appl. Genet. 117:935-945. doi:10.1007/s00122-008-0833-0
  • Umemoto T, Horibata T, Aoki N, Hiratsuka M, Yano M, Inouchi N (2008) Rice starch properties and eating quality of cooked rice affected by starch synthase variations. Plant Prod. Sci. 11:472-480 doi:10.1626/pps.11.472
  • Kanbe T,Sasaki H, Aoki N, Yamagishi T, Ebitani T, Yano M, Ohsugi R (2008) Identification of stable QTLs toward Improvement of Plant Type and Source Function in Rice (Oryza sativa L.) using Koshihikari / Kasalath CSSLs. Plant Prod. Sci. 11: 447-456 doi:10.1626/pps.11.447
  • Matsubara K, Yamanouchi U, Wang ZX, Minobe Y, Izawa T, Yano M (2008) Ehd2, a rice ortholog of the maize ID1 gene, promotes flowering by upregulating Ehd1. Plant Phyisol. 148(3):1425-1435 PMID:18790997
  • Kobayashi A, Tomita K, Yu F, Takeuchi Y, Yano M (2008) Verification of quantitative trait locus for the stickiness of cooked rice and amylose content by developing near-isogenic lines. Breed. Sci. 58: 235-242. doi:10.1270/jsbbs.58.235
  • Ebana K, Kojima Y, Fukuoka S, Nagamine T, Kawase M (2008) Development of mini core collection of Japanese rice landrace. Breed. Sci. 58: 281-291. doi:10.1270/jsbbs.58.281
  • Fujino K, Sekiguchi H, Matsuda Y, Sugimoto K, Ono K, Yano M (2008) Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice. Proc Natl Acad Sci USA. 105:12623-12628. PMID: 18719107
  • Shomura A, Izawa T, Ebana K, Ebitani T, Kanegae H, Konishi S, Yano M (2008) Deletion in a gene associated with grain size increased yields during rice domestication. Nat Genet. 40(8):1023-1028. PMID: 18604208
  • Terashima T, Fukuoka S, Saka N, Kudo S (2008) Mapping of a blast field resistance gene Pi39(t) of elite rice strain Chubu 111. Plant Breeding 127(5):485-489 doi: 10.1111/j,1439-0523.2007.01451.x
  • Uga Y, Okuno K, Yano M (2008) QTLs underlying natural variation in stele and xylem structures of rice root. Breeding Science 58: 7-14 doi:10.1270/jsbbs.58.7
  • Ando T, Yamamoto T, Shimizu T, Ma XF, Shomura A, Takeuchi Y, Lin SY, Yano M (2008) Genetic dissection and pyramiding of quantitative traits for panicle architecture by using chromosomal segment substitution lines in rice. Theor Appl Genet Apr;116(6):881-890. Epub 2008 Feb 15. PMID: 18274726
  • Nonoue Y, Fujino K, Hirayama Y, Yamanouchi U, Lin SY, Yano M (2008) Detection of quantitative trait loci controlling extremely early heading in rice. Theor Appl Genet 116(5):715-722. Epub 2008 Jan 9.PMID: 18193402
  • Yamamoto T, Yano M (2008) Detection and molecular cloning of genes underlying quantitative phenotypic variations in rice. In Rice Biology in the Genomics Era (Eds., Hirano HY et al.) Springer, Berlin. pp295-308

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2007

  • Kawakami, S, Ebana K, Nishikawa T, Sato Y, Vaughan D, Kadowaki K. (2007) Genetic variation in the chloroplast genome suggests multiple domestication of cultivated Asian rice (Oryza sativa L.). Genome 50: 180-187
  • Kusano M, Fukushima A, Kobayashi M, Hayashi N, Jonsson P, Moritz T, Ebana K, Saito K (2007) Application of a metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice. Journal of Chromatography B 855(1): 71-79
  • Ma JF, Yamaji N, Mitani N, Tamai K, Konishi S, Fujiwara T, Katsuhara M, Yano M (2007) An efflux transporter of silicon in rice. Nature 448(7150): 209-212
  • Matsubara K, Ando T, Mizubayashi T, Ito S, Yano M (2007) Identification and linkage mapping of complementary recessive genes causing hybrid breakdown in an intraspecific rice cross. Theor Appl Genet 115(2): 179-186
  • Sugimoto H, Kusumi K, Noguchi K, Yano M, Yoshimura A, Iba K (2007) The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria. The Plant Journal 52(3): 512 527
  • Takai T, Nonoue Y, Yamamoto S, Yamanouchi U, Matsubara K, Liang Z-W, Lin H, Ono N, Uga Y, Yano M (2007) Development of chromosome segment substitution lines derived from backcross between indica donor rice cultivar ‘Nona Bokra Eand japonica recipient cultivar ‘Koshihikari E Breeding Science 57(3): 257-261
  • Takeuchi Y, Nonoue Y, Ebitani T, Suzuki K, Aoki N, Sato H, Ideta O, Hirabayashi H, Hirayama M, Ohta H, Nemoto H, Kato H, Ando I, Ohtsubo K, Yano M, Imbe T (2007) QTL detection for eating quality including glossiness, stickiness, taste and hardness of cooked rice. Breeding Science 57(3): 231-242
  • Iwata H, Uga Y, Yoshioka Y, Ebana K, Hayashi T (2007) Bayesian association mapping of multiple quantitative trait loci and its application to the analysis of genetic variation among Oryza sativa L. germplasms. Theor Appl Genet 114(8): 1437-1449
  • Uga Y, Nonoue Y, Liang Z. W, Lin H. X, Yamamoto S, Yamanouchi U, Yano M (2007) Accumulation of additive effects generates a strong photoperiod sensitivity in the extremely late-heading rice cultivar ‘Nona Bokra E Theor Appl Genet 114(8): 1457-1466
  • Zenbayashi-Sawata K, Fukuoka S, Katagiri S, Fujisawa M, Matsumoto T, Ashizawa T, Koizumi S (2007) Genetic and physical mapping of the partial resistance gene, Pi34, to blast in rice. Phytopathology 97(5): 598-602
  • Yano M, Izawa T (2007) Genetic and molecular dissection of flowering time in rice. Rice Genetics V Proceedings of the Fifth International Rice Genetics Symposium ():177-190
  • Ashikari M, Matsuoka M, Yano M (2007) Application of functional genomics tools for crop improvement. Rice Functional Genomics: Challenges, Progress and Prospects ():411-428

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2006

  • Fukuoka S, Suu T. D, Ebana K, Trinh LN, Nagamine T, Okuno K (2006) Diversity in phenotypic profiles in landrace populations of Vietnamese rice: a case study of agronomic characters for onserving crop genetic diversity on farm. Genetic Resources and Crop Evolution 53(4): 753-761
  • Fukuoka S, Tran D. S, Ebana K, Luu TN, Nagamine T, Okuno K (2006) Genetic organization of aromatic rice as revealed by RAPD markers: A case study in conserving crop genetic resources on farm. Euphytica 149(1-2): 61-71
  • Kobayashi A, Ebana K, Fukuoka S, Nagamine T (2006) Microsatellite markers revealed the genetic diversity of an Old Japanese Rice Landrace ‘Echizen E Genetic Resources and Crop Evolution 53(3): 499-506
  • Konishi S, Izawa T, Lin SY, Ebana K, Fukuta Y, Sasaki T, Yano M (2006) An SNP caused loss of seed shattering during rice domestication. Science 312(5778): 1392-1396
  • Ma JF, Tamai K, Yamaji N, Mitani N, Konishi S, Katsuhara M, Ishiguro M, Murata Y, Yano M (2006) A silicon transporter in rice. Nature 440(7084): 688-691
  • Saka N, Tsuji T, Toyama T, Yano M, Izawa T, Sasaki T (2006) Development of cleaved amplified polymorphic sequence (CAPS) markers linked to a green rice leafhopper resistance gene, Grh3(t). Plant Breeding 125(2): 140-143
  • Takehisa H, Ueda T, Fukuta Y, Obara M, Abe T, Yano M, Yamaya T, Kameya T, Higashitani A, Sato T (2006) Epistatic interaction of QTLs controlling leaf bronzing in rice (Oryza sativa L.) grown in a saline paddy field. Breeding Science 56(3): 287-293
  • Takeuchi Y, Ebitani T, Yamamoto T, Sato H, Ohta H, Hirabayashi H, Kato H, Ando I, Nemoto H, Imbe T, Yano M (2006) Development of isogenic lines of rice cultivar Koshihikari with early and late heading by marker-assisted selection. Breeding Science 56(4): 405-413
  • Taguchi-Shiobara F, Yazaki J, Ishikawa M, Fujii F, Shimbo K, Shimatani Z, Nagata Y, Hashimoto A, Ohta T, Sato Y, Honda S, Yamamoto K, Sakata K, Sasaki T, Kishimoto N, Kikuchi S (2006) A microarray analysis of rice near-isogenic lines that cover QTLs associated with callus proliferation. JARQ 40(3): 243-249
  • Taguchi-Shiobara F, Yamamoto T, Yano M, Oka S (2006) Mapping QTLs that control the performance of rice tissue culture and evaluation of derived near-isogenic lines. Theor Appl Genet 112: 968-976

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