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| Development of Rice Genome Simulators |
| Outline of Project | Research Subjects and Participants |
Publications | ||||
| Last updated : 2003/11/17 |
| Project Leader |
| Kenichi HIGO, NIAS |
| Subject ID No. |
Team Subject | Team Leader |
| SY1101-SY1114 | Preparation of a consolidated rice genome database | Yoshiaki NAGAMURA, NIAS |
| SY2101-SY2108 | Development of rice genome simulator | Katsumi SAKATA, Mitsubishi Space Software Co.,Ltd. |
| Subject ID No. | Research Period | Research Subject | Participants |
| SY1101 | 2001.4-2004.3 | Development of computational model and promoter prediction method for rice genes | Hisataka NUMA NIAS |
| SY1102 | 2001.4-2004.3 | Development of rice genome annotation database | Nobukazu NAMIKI Society for Techno-innovation of Agriculture, Forestry and Fisheries |
| SY1103 | 2001.4-2004.3 | Development of the automated prediction system for gene functions and their integrated databases combined with RiceGAAS (Rice Genome Automated Annotation System) | Yuji SHIMIZU Mitsubishi Space Software Co., Ltd. |
| SY1104 | 2001.4-2004.3 | Extraction of gene regulatory information in Rice non-coding sequences | Masaru TOMITA Keio University |
| SY1105 | 2001.4-2004.3 | Construction of rice SAGE (Serial Analysis of Gene Expression) database for understanding rice genome function | Hideo MATSUMURA Iwate Biotechnology Research Center |
| SY1106 | 2001.4-2004.3 | Rice Systeome Analysis (Phase-I) | Hiroaki KITANO The Systems Biology Institute |
| Shuichi ONAMI The Systems Biology Institute |
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| SY1107 | 2001.4-2004.3 | A Rice Research Database and Software for Simulation of Breeding Strategy | Yuzo MINOBE Plant Genome Center |
| SY1108 | 2001.4-2004.3 | The rice growth monitoring system for the phenotypic functional analysis | Tomoko SHINOMURA Hitachi Central Research Laboratory |
| SY1109 | 2001.4-2004.3 | Tohru YAMAGISHI The University of Tokyo |
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| Haruto SASAKI The University of Tokyo |
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| Ken ISHIMARU NIAS |
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| SY1110 | 2002.4-2005.3 | Construction of a rice characteristic database | Hisatoshi OHTA National Institute of Crop Science |
| Hiroyuki SHIMIZU National Agricultural Research Center for Hokkaido Region |
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| Masayuki YAMAGUCHI National Agricultural Research Center for Tohoku Region |
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| Taketo ASHIZAWA National Agricultural Research Center for Tohoku Region |
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| Kiyoyuki MIURA National Agricultural Research Center |
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| Yoshihiro SUNOHARA National Agricultural Research Center for Western Region |
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| Masahiro OKAMOTO National Agricultural Research Center for Kyushu Okinawa Region |
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| SY1111 | 2002.4-2003.3 | Construction of genome methylation database in Rice | NIAS |
| Aichi Institute of Technology | |||
| SY1112 | 2002.4-2005.3 | Construction of Rice microarray and Rice proteome Databases and their data pipeline system | Shoshi KIKUCHI NIAS |
| KOMATSU SETSUKO NIAS |
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| NAGAMURA YOSHIAKI NIAS |
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| Hitachi Software Engineering Co.,Ltd. | |||
| SY1113 | 2002.4-2003.3 | Development of a database platform for the Rice Genome Project | Fuji Research Institute Co., Ltd. |
| SY1114 | 2002.4-2005.3 | A systematic approach for analyzing transcriptional regulatory network in rice | Hiroshi YANAGAWA Keio University |
| Masaru TOMITA Keio University |
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| SY2101 | 2001.4-2004.3 | Insilico search of photosynthesis related genes in rice and development of navigator for gene expression in the chloroplast genome | Masahiro SUGIURA Nagoya City University |
| Junichi OBOKATA Nagoya University |
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| ChudenCTI Co.,Ltd. | |||
| SY2102 | 2001.4-2004.3 | Development of high-throughput measuring system of intracellular metabolites for the simulation of plant cells | Takaaki NISHIOKA Kyoto University |
| Tomoyoshi SOGA Kyoto University |
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| SY2103 | 2001.4-2004.3 | e-Rice: Development of Rice simulation model and its software infrastructure | Masaru TOMITA Keio University |
| SY2104 | 2001.4-2003.3 | Development of rice growth simulator and method for integrating submodels | University of Tokyo |
| SY2105 | 2001.4-2003.3 | National Agricultural Research Center | |
| SY2106 | 2001.4-2004.3 | Development of a rice simulator interfacing gene function to field performance | Takeshi HORIE Kyoto University |
| SY2107 | 2001.4-2003.3 | Development of a simulator for rice development and differentiation using cell lineage markers | National Institute of Genetics |
| SY2108 | 2001.4-2003.3 | Development of prediction method of heading date in rice | NIAS |